#!/bin/bash ####################################### ### Install and setup Slurm cluster ### ####################################### # Print commands and exit on error set -xe # Increase APT retries and timeouts to improve provisioning reliability cat > /etc/apt/apt.conf.d/99custom-retries << EOF Acquire::Retries "5"; Acquire::http::Timeout "120"; Acquire::ftp::Timeout "120"; EOF # Prevents interactive prompts during package installation export DEBIAN_FRONTEND=noninteractive # Keep system clocks in sync apt-get update apt-get install -y chrony systemctl start chrony systemctl enable chrony # Create MUNGE user getent group munge > /dev/null || groupadd -r -g 900 munge id -u munge &>/dev/null || \ useradd -r -u 900 -g munge -d /var/lib/munge -s /usr/sbin/nologin munge # Create slurm user getent group slurm > /dev/null || groupadd -g 1001 slurm id -u slurm &>/dev/null || \ useradd -m -u 1001 -g slurm -s /bin/bash slurm # Create submit user getent group submit > /dev/null || groupadd -g 1002 submit id -u submit &>/dev/null || \ useradd -M -u 1002 -g submit -s /bin/bash -d /vagrant/scratch/submit submit mkdir -p /vagrant/scratch/submit # Update APT cache apt-get update # Install MUNGE, remove any default key, and stop to place another key later if ! dpkg -s munge &>/dev/null; then apt-get install -y munge systemctl stop munge rm -f /etc/munge/munge.key fi # Install slurm client tools dpkg -s slurm-client &>/dev/null || apt-get install -y slurm-client # Create directories for Slurm mkdir -p /var/spool/slurm /etc/slurm chown slurm:slurm /var/spool/slurm /etc/slurm # Copy slurm.conf and cgroup.conf cp -f /vagrant/slurm.conf /etc/slurm/slurm.conf cp -f /vagrant/cgroup.conf /etc/slurm/cgroup.conf chown slurm:slurm /etc/slurm/slurm.conf /etc/slurm/cgroup.conf chmod 644 /etc/slurm/slurm.conf /etc/slurm/cgroup.conf # node1 = manager if [ "$(hostname)" == "node1" ]; then # Create common MUNGE key on the manager node if [ ! -f /etc/munge/munge.key ]; then sudo -u munge /usr/sbin/mungekey --verbose fi # Copy to shared directory for other nodes cp /etc/munge/munge.key /vagrant/munge.key # Enable/start/test munge service chmod 400 /etc/munge/munge.key systemctl enable munge systemctl start munge # Install Slurm Workload Manager and doc package for the Slurm config tool if ! dpkg -s slurm-wlm &>/dev/null; then apt-get install -y slurm-wlm slurm-wlm-doc # Create directories for slurmctld systemctl stop slurmctld mkdir -p /var/spool/slurmctld chown slurm:slurm /var/spool/slurmctld chmod 755 /var/spool/slurmctld # Start Slurm controller systemctl enable slurmctld systemctl start slurmctld fi else # Initial delay sleep 5 # Waits JOIN_TIMEOUT of seconds to find the munge.key file before giving up START_TIME="$(date +%s)" # Wait until the munge.key can be found via Vagrant provider file sharing while [ ! -f /vagrant/munge.key ]; do CURRENT_TIME="$(date +%s)" DIFF_TIME="$((CURRENT_TIME - START_TIME))" # Timeout if [ "$DIFF_TIME" -ge "$JOIN_TIMEOUT" ]; then echo "[ERROR]: $(hostname) waited $DIFF_TIME/$JOIN_TIMEOUT seconds" exit 1 fi # Waiting echo "Waiting ($DIFF_TIME/$JOIN_TIMEOUT seconds) for /vagrant/munge.key file" sleep 10 done # Enable/start munge service sleep 3 cp -f /vagrant/munge.key /etc/munge/munge.key chown munge:munge /etc/munge/munge.key chmod 400 /etc/munge/munge.key systemctl enable munge systemctl start munge # Install SLURM compute node daemon on node[3-4] if [[ $(hostname) == node[3-4] ]]; then mkdir -p /var/spool/slurmd chown slurm:slurm /var/spool/slurmd apt-get install -y slurmd systemctl enable slurmd systemctl start slurmd fi fi