Fix current issues with vagrant box creation

Vagrantfile

@@ -4,7 +4,7 @@ Vagrant.configure(2) do |config|
 
   config.vm.box_url = 'http://software.apidb.org/vagrant/centos-7-64-puppet.json'
   config.vm.box = 'ebrc/centos-7-64-puppet'
- 
+
   config.vm.hostname = 'redmine.vm.apidb.org'
   config.vm.network :private_network, type: 'dhcp'
 
@@ -22,7 +22,7 @@ Vagrant.configure(2) do |config|
 #  end
 
   config.vm.provision 'deploy', type: 'ansible' do |ansible|
-    ansible.playbook = 'playbook.yml'
+    ansible.playbook = 'vagrant-playbook.yml'
     ansible.galaxy_role_file = 'requirements.yml'
     ansible.galaxy_roles_path = 'roles'
   end

config.yml

@@ -1,4 +1,3 @@
-easyredmine_login_bg_img: login-bg-58894778db89f0c55f5aa371eff62b7475325258f4308e9c286f988a37e0e44b.jpg
 redmine_mail_alias: redmine@localhost
 redmine_owner: vagrant
 redmine_uid: ''
@@ -16,7 +15,7 @@ remote_scratch_path: /vagrant/scratch
 nginx_pem: redmine.vm-rsa.pem
 installer_package_name: installation-package_latest_43921320-9957-4066-9e2c-bfb611968507_2021-03-10.zip
 installer_package_path: '{{ remote_scratch_path }}/{{ installer_package_name }}'
-installer_package_url: 'http://software.apidb.org/source/easyredmine/{{ installer_package_name }}'
+installer_package_url: 'https://software.apidb.org/source/easyredmine/{{ installer_package_name }}'
 redmine_db_dump_file: '{{ remote_scratch_path }}/redmine_dump.sql.gz'
 redmine_root_dir: /opt/easyredmine
 mysql_admin_login: root
@@ -56,3 +55,10 @@ rvm1_bundler_install: yes
 rvm1_install_path: '/home/{{ redmine_owner }}/.rvm'
 rvm1_rvm_check_for_updates: no
 rvm1_user: '{{ redmine_owner }}'
+
+# Unprioritize dead key server, see: https://github.com/rvm/rvm1-ansible/issues/228
+rvm1_gpg_key_servers:
+  - hkp://pgp.mit.edu
+  - hkp://keyserver.pgp.com
+  - '{{ rvm1_gpg_key_server }}'
+  #- hkp://ipv4.pool.sks-keyservers.net

playbook.yml

@@ -2,8 +2,6 @@
 - hosts: all
   become: yes
   gather_facts: yes
-  vars_files:
-    - config.yml
 
   roles:
     - { role: rvm.ruby, tags: ruby, become: yes }

roles/easyredmine/tasks/database.yml

@@ -56,6 +56,7 @@
     target: '{{ _redmine_db_import_file }}'
     login_user: '{{ mysql_admin_login }}'
     login_password: '{{ mysql_admin_password }}'
+    login_unix_socket: '/var/lib/mysql/mysql.sock'
   become: yes
   register: redmine_db_import
   when: do_redmine_db_import == True and (redmine_db_import_done.stat.exists == False or redmine_db_created is changed)

roles/easyredmine/tasks/nginx.yml

@@ -68,6 +68,7 @@
     src: '{{ nginx_pem }}'
   become: yes
   notify: restart nginx
+  when: not is_production_vm
 
 - name: manage Nginx service
   service:

roles/easyredmine/tasks/redmine.yml

@@ -2,7 +2,13 @@
   yum:
     name: ['mysql-devel', 'unzip', 'rubygems', 'ruby-devel', 'libuuid-devel',
            'zlib-devel', 'openssl-devel', 'gcc-c++', 'ImageMagick-devel',
-           'expect', 'subversion', 'git']
+           'expect', 'subversion', 'git', 'epel-release']
+  become: yes
+
+- name: install javascript runtime
+  yum:
+    name: 'nodejs'
+    update_cache: yes
   become: yes
 
 # these gems are not user_install but the RVM path is for local redmine
@@ -96,17 +102,6 @@
   when: do_redmine_installer == True
   become: yes
 
-- name: install custom login background image
-  copy:
-    dest: '{{ item }}'
-    src: '{{ easyredmine_login_bg_img }}'
-    owner: '{{ redmine_owner }}'
-  with_items:
-    - '{{ redmine_root_dir }}/public/plugin_assets/easy_extensions/images/login-bg.jpg'
-    - '{{ redmine_root_dir }}/public/assets/{{ easyredmine_login_bg_img }}'
-  when: do_redmine_installer == True
-  become: yes
-
 - name: create maintenance dir
   file:
     path: '/usr/share/nginx/html/easyredmine'

roles/easyredmine/tasks/system.yml

@@ -1,6 +1,14 @@
 
 - import_tasks: addswap.yml
 
+# Temporary workaround for outdated vagrant box base
+- name: upgrade all packages
+  yum:
+    name: '*'
+    state: latest
+    update_cache: yes
+  become: yes
+
 - name: install system tools
   yum:
     name: ['rsync', 'strace', 'nmap', 'yum-utils', 'sendmail',

roles/easyredmine/templates/redmine_fetch_changesets.j2

@@ -7,6 +7,6 @@ cd {{ redmine_root_dir }}
 [[ -s "{{ rvm1_install_path }}/scripts/rvm" ]] && \
   source "{{ rvm1_install_path }}/scripts/rvm"
 
-{{ rvm1_install_path }}/gems/ruby-{{ ruby_version }}/bin/bundle exec rake \
+{{ rvm1_install_path }}/rubies/ruby-{{ ruby_version }}/bin/bundle exec rake \
   eupathdb:fetch_changesets \
   RAILS_ENV="production"

roles/easyredmine/templates/redmine_receive_imap.j2

@@ -5,11 +5,11 @@ cd {{ redmine_root_dir }}
 [[ -s "{{ rvm1_install_path }}/scripts/rvm" ]] && \
   source "{{ rvm1_install_path }}/scripts/rvm"
 
-{{ rvm1_install_path }}/gems/ruby-{{ ruby_version }}/bin/bundle exec rake \
+{{ rvm1_install_path }}/rubies/ruby-{{ ruby_version }}/bin/bundle exec rake \
     redmine:email:receive_imap \
     RAILS_ENV="production" \
     project=sysdba \
-    allow_override=project,assigned_to,tracker,priority,category,status \
+    allow_override=project,assigned_to,tracker,priority,category,status,"VEuPathDB Team","Type of support","Component DB","Support source" \
     host=imap.gmail.com \
     port=993 ssl=SSL  \
     username={{ smtp_username }} \

vagrant-playbook.yml

@@ -0,0 +1,13 @@
+---
+- hosts: all
+  become: yes
+  gather_facts: yes
+  vars_files:
+    - config.yml
+
+  roles:
+    - { role: rvm.ruby, tags: ruby, become: yes }
+    - { role: rvm.ruby.patch, tags: ruby, become: yes }
+    - { role: easyredmine, become: no }
+
+  tasks: